Skip to content

Helpers scripts

How to simulate NGS Dataset transfer from GeneCore

Use this following script (call from the <path-to>/labid-server-root/labid-server/).

DJANGO_SECRET_KEY=x DJANGO_SETTINGS_MODULE="labid_server.settings.base" PYTHONPATH=$PWD ./scripts/assays/register.py --owner <user> --volume /tmp --nr_of_datasets 2  --flowcell hoi-1 --lane 1 --runtype paired-end --multiplexed True --demultiplexed True

Make sure to:

  • replace the --owner <user> with a user existing in your local installation
  • adapt options --nr_of_datasets 2 --flowcell xyz --lane 1 --runtype paired-end --multiplexed True --demultiplexed True to reflect your needs
  • change the --flowcell value at each call to make it unique as this is a constraint of the database i.e. UNIQUE (group,flowcell,lane)

Note that by default /tmp should be a volume existing in your local installation, if not create it using the Admin UI (LINK_TO_BE_ADDED).