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LabID Documentation

Home
Getting Started
Getting Started
- Lab Inventory
  Lab Inventory
  - Collections
    
    Collections
    
    Overview
    
    Item Description
    
    Customization
  - Biomaterials
    
    Biomaterials
    
    Overview
    
    Sample types
    
    Lineage
    
    Management
  - Protocols
- Electronic Lab Notebook
  Electronic Lab Notebook
- Data Management
  Data Management
  - Overview
  - Supported platform & technologies
  - Datasets
  - Workflows
  - Registration strategies
  - Data Organization & Access
  - Import
    Import
    
    Trusted sources (GeneCore)
    
    Raw datasets
  - Multi-omics support
  - Archive
  - Restore
  - S3 synchronisation
- Publishing Data to Repositories
  Publishing Data to Repositories
  - Data Preparation
  - NGS Data Submission
    NGS Data Submission
    
    ENA
    
    EGA
    
    BioStudies/Annotare
  - Image Data Submission
    Image Data Submission
    
    BioImage Archive
Features
Features
- Electronic Lab Notebook
  Electronic Lab Notebook
  - Introduction
    
    Introduction
  - Concepts
    Concepts
    
    The Experiment Model
    
    Relationships
    
    Lifecycle
    
    Timestamping
  - Lab note (Experiment)
    
    Lab note (Experiment)
    
    Create a note
    
    Derive from protocol
    
    Editing samples relationships
    
    Sharing
    
    Exporting
  - Text Editor
    
    Text Editor
    
    Embed Pictures
    
    Cross references
- Collections
  Collections
  - Create Items
    
    Create Items
    
    With online forms
    
    With spreadsheets (batch)
  - Detail Views
    
    Detail Views
    
    Overview
    
    Edit items
    
    Share items
    
    Delete
  - List Views
    
    List Views
    
    Overview
    
    Search & filter
    
    Customisations
    
    Next unique code in serie
  - Batch Operations
    
    Batch Operations
    
    Overview
    
    Edit
    
    Import
    
    Export
    
    Share
    
    Delete
- Data Management
  Data Management
  - Import
    Import
    
    Trusted sources (GeneCore)
    
    Raw datasets
  - Dataset Status
  - Assays
    Assays
    
    Templates
    
    Protection
  - Archive
    
    Archive
  - Deletion & Removal
    
    Deletion & Removal
  - Restore
    
    Restore
  - S3 synchronisation
    
    S3 synchronisation
- Workflow Management
  Workflow Management
- Common Features
  Common Features
  - Sharing items
    
    Sharing items
  - Annotations
    
    Annotations
  - Search
    
    Search
  - File Attachment
    
    File Attachment
    
    Attach a file
    
    Collaborative edition
  - Async tasks
    
    Async tasks
  - Notes
    
    Notes
  - Lineage visualisation
    
    Lineage visualisation
  - User
    User
    
    Dashboard
    
    Statistics (managers)
  - Mobile capabilities
    
    Mobile capabilities
- Integrations
  Integrations
  - Galaxy
  - Libre Office
CLI
CLI
Stories
Stories
- TREC Biobanking
- Automating Data Registration (Vincent Lab)
Training
Training
- Agenda
- Electronic Lab Notebook
  Electronic Lab Notebook
- Collection Management
  Collection Management
  - Create, Browse and Edit Items
  - Batch Operations
- Sample Management
  Sample Management
- Dataset & Assay Management
  Dataset & Assay Management
- Data Sharing & Publication
  Data Sharing & Publication
  - Publish a Sequencing Study
- Working with Galaxy
  Working with Galaxy
- Workflow Management
  Workflow Management
- Command Line Interface
  Command Line Interface
  - Python Client - 101 Getting Started
  - Python Client - Exclusive Features
Admin
Admin
- Settings
  Settings
- Workflows
  Workflows
  - SSH keys for Git
- User and Group Management
  User and Group Management
- Model Management
  Model Management
  - New Protocol Type :fontawesome-solid-arrow-pointer: UI
  - New Storage Equipment Type :fontawesome-solid-arrow-pointer: UI
- StorageVolume Management
  StorageVolume Management
- Data Management
  Data Management
- Task Management
  Task Management
- Vocabulary Management
  Vocabulary Management
- Advanced
  Advanced
Install
Install
Dev
Dev
- Workflows
  Workflows
  - Technical Specifications
    Technical Specifications
    
    System Architecture
    
    File Types
    
    Versioning
    
    Publishing & RO-Crate
  - API Reference
    API Reference
    
    Workflow Run API
  - Integrations
    Integrations
    
    External Integrations
Releases
Releases
FAQ

Notes¶

Work in progress

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